Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics
As acquiring bigger data becomes easier in experimental brain science, com-putational and statistical brain science must achieve similar advances to fullycapitalize on these data. Tackling these problems will benefit from a moreexplicit and concerted effort to work together. Specifically, brain sciencecan be further democratized by harnessing the power of community-driven tools, which both are built by and benefit from many different people with different backgroundsand expertise. This perspective can be applied across modalities and scales and enables collabora-tions across previously siloed communities.
Diffeomorphic registration with intensity transformation and missing data: Application to 3D digital pathology of Alzheimer's disease
We develop methods for accurate image registration between images of different modalities, possibly in the presence of damaged or missing tissue. We use this approach to build the first 3D reconstruction of tau tangle pathology in the medial temporal lobe for an individual who died of Alzheimer's disease.
Solving the where problem in neuroanatomy: a generative framework with learned mappings to register multimodal, incomplete data into a reference brain
We developed a generative algorithm for registration of micron resolution serial section microscopy images to the Allen reference atlas.
Diffeomorphic Upsampling of Serially Acquired Sparse 2D Cross-Sections in Cardiac MRI
We design diffeomorphic techniques to estimate unobserved data between sparsely sampled slices in cardiac MRI.
Estimating diffeomorphic mappings between templates and noisy data: Variance bounds on the estimated canonical volume form
We derived the Cramer Rau bound for estimating volume changes from deformable image registration, which is a lower bound on the variance of an estimator. We demonstrated its implications for image registration performance in asymmetric methods versus symmetric methods, the former generally performing better.