Hidden Markov modeling for maximum probability neuron reconstruction

We developed a new technique for automatically tracing out long neuron processes in microscopy images.

T. L. Athey, D. J. Tward, U. Mueller, J. T. Vogelstein, and M. I. Miller, in Communications Biology.
Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry

We developed a new approach to studying the geometry of axons using data from the MouseLight project.

T. L. Athey, J. Teneggi, J. T. Vogelstein, D. J. Tward, U. Mueller, and M. I. Miller, in Frontiers in Neuroinformatics.